Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGGGATGGCAGCTGTGAG
((((((((((.(((.(.((((&))))).))).)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001286403
GeneSymbolCIITA
Binding site12723,12744
Score0.846
Seed1
Au0.324
Energy-24.3
Binding len21
Me-7.498
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure