Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTGCGGCCCCCGAGCGCTGCT
..(((((.((((((((((((.&)))))))))).....))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001286516
GeneSymbolDNAJA3
Binding site173,196
Score0.846
Seed0
Au0.382
Energy-21.9
Binding len23
Me-7.271
Phylopstem0.5691235176470589
Phylopflank0.8067730025
Longest consecutive pairings10
Position of longest consecutive pairings13
Pairings in 3prime end7
PositionCDS
2D Structure