Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GTCTGCCCCATCTGCCAGGA
.(((((((......((((((..&))))))......))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001286633
GeneSymbolTRIM40
Binding site390,410
Score0.846
Seed1
Au0.368
Energy-18.9
Binding len20
Me-14.41
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure