Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATTTTGCATGAGCAGCTGTAGC
((((((((((...((((((((&))))))))...)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001286717
GeneSymbolAGTPBP1
Binding site3303,3325
Score0.923
Seed1
Au0.544
Energy-22.6
Binding len22
Me-11.398
Phylopstem4.3321977
Phylopflank4.5011283875
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end8
PositionCDS
2D Structure