Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGGGGCAGCGGCTGCAGCAGCGGC
((((.(((((((((((.....&.))))))))))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001286755
GeneSymbolSYNPO2
Binding site32,58
Score0.846
Seed0
Au0.265
Energy-22.2
Binding len18
Me-8.057
Phylopstem-0.48801893636363647
Phylopflank0.30542660652173914
Longest consecutive pairings11
Position of longest consecutive pairings6
Pairings in 3prime end3
Position5UTR
2D Structure