Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTCGCAATGTGCTCAGCGAGTACCAGCAGAGGCCGCAGCGGCT
..((.(((((((((((..(((&.))).)))...)))))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001287426
GeneSymbolUPP1
Binding site1412,1456
Score0.808
Seed0
Au0.456
Energy-21.8
Binding len23
Me-9.076
Phylopstem2.7277136428571427
Phylopflank3.5630367562500007
Longest consecutive pairings8
Position of longest consecutive pairings4
Pairings in 3prime end6
PositionCDS
2D Structure