Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GAGCTACATTGGTAAGTAATAAATTATTTAAGGCCAGGA
.((((((...((((((((.(((&))))))))))).....................)))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001287811
GeneSymbolDNAJC16
Binding site4132,4171
Score0.846
Seed1
Au0.632
Energy-18.4
Binding len39
Me-8.406
Phylopstem1.006305625
Phylopflank0.49168696125
Longest consecutive pairings11
Position of longest consecutive pairings28
Pairings in 3prime end7
Position3UTR
2D Structure