Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTCAAACAGCTGCAC
.((((((((...(((.(((((&)))))))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001287811
GeneSymbolDNAJC16
Binding site4682,4700
Score1.0
Seed1
Au0.618
Energy-20.0
Binding len18
Me-11.44
Phylopstem0.257769375
Phylopflank0.037887477500000016
Longest consecutive pairings8
Position of longest consecutive pairings10
Pairings in 3prime end7
Position3UTR
2D Structure