Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTGCAGCTATAAATAGGCAATTCAGATTGCTGTAGT
(((((((((((((((((((..&)))))))))........))).........))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001288826
GeneSymbolGDF9
Binding site1729,1766
Score0.846
Seed1
Au0.676
Energy-17.8
Binding len37
Me-3.938
Phylopstem-0.4109311277777778
Phylopflank-0.05907575874999999
Longest consecutive pairings9
Position of longest consecutive pairings28
Pairings in 3prime end6
Position3UTR
2D Structure