Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACTGGTACAACTGTAACTGCT
..((((.((((((((((.(((&)))..)))))))))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001289409
GeneSymbolPMS1
Binding site292,313
Score1.0
Seed0
Au0.662
Energy-20.4
Binding len21
Me-6.501
Phylopstem0.37936204000000007
Phylopflank0.04606673999999989
Longest consecutive pairings10
Position of longest consecutive pairings6
Pairings in 3prime end7
Position5UTR
2D Structure