Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTCACAATCCCAGATGGGTTCTAATGCAGCTGCT
..((((((((((((((.(((.&))).))))))................)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018389
GeneSymbolSLC35C1
Binding site3345,3380
Score0.846
Seed1
Au0.456
Energy-22.5
Binding len35
Me-4.957
Phylopstem0.5582257466666667
Phylopflank-0.091454035
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure