Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCATTGACCAGCCGGAGTTGCAT
.(((((((.((((((((((((&))).)))..)))))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018667
GeneSymbolSMPD3
Binding site279,303
Score0.962
Seed1
Au0.368
Energy-23.5
Binding len24
Me-4.85
Phylopstem3.053077333333334
Phylopflank2.9894104624999995
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end8
Position5UTR
2D Structure