Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCAATGACAACTCACCTCTCTTTCCTGCCGGCGACGTGCAGCTGCAC
.(((((((((((((((..(((&.))).))))).)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018898
GeneSymbolPCDHAC1
Binding site942,990
Score0.846
Seed1
Au0.338
Energy-27.5
Binding len22
Me-3.793
Phylopstem2.507711875
Phylopflank0.7124702354999998
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure