Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCACACTGACCAACGCAGCTGGCAAG
((((((((((((((((..(((&)))..)).))))...))))))).))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018912
GeneSymbolPCDHGA1
Binding site2871,2898
Score0.846
Seed1
Au0.353
Energy-20.7
Binding len27
Me-3.938
Phylopstem1.7669266952380949
Phylopflank1.8120347774999996
Longest consecutive pairings7
Position of longest consecutive pairings5
Pairings in 3prime end6
PositionCDS
2D Structure