Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
((((((((((((((((..(((&.)))..)).))))...))))))).))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018918
GeneSymbolPCDHGA5
Binding site2857,2896
Score0.846
Seed1
Au0.353
Energy-20.9
Binding len28
Me-3.938
Phylopstem1.8723319047619047
Phylopflank1.7322844124999999
Longest consecutive pairings7
Position of longest consecutive pairings5
Pairings in 3prime end6
PositionCDS
2D Structure