Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
((((((((((((((((..(((&.)))..)).))))...))))))).))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018921
GeneSymbolPCDHGA9
Binding site2866,2905
Score0.846
Seed1
Au0.353
Energy-20.9
Binding len28
Me-3.938
Phylopstem1.7049248380952389
Phylopflank1.7534425824999995
Longest consecutive pairings7
Position of longest consecutive pairings5
Pairings in 3prime end6
PositionCDS
2D Structure