Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTGGATCCCGAGGACTGCAGCTGCT
..((((((((((((.(..((.&.))..).)))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001365479
GeneSymbolUSP40
Binding site4554,4581
Score1.0
Seed1
Au0.382
Energy-26.4
Binding len20
Me-5.692
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings12
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure