Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GGGTCTCCCGCTCCTCAGGCTTGCGGCTCGGCCGCGAAGTGTGTCAGGTG
(((((((((((..(((......&.)))..))))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_018941
GeneSymbolCLN8
Binding site5682,5732
Score0.923
Seed1
Au0.382
Energy-18.0
Binding len18
Me-8.574
Phylopstem-0.29003941818181816
Phylopflank-0.43027985249999995
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end2
Position3UTR
2D Structure