Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTCAAGCAGCCCGAGGAGGCCCTGCCCTTCCTAGAGCGGCTGCT
..((((((((((((((.((((&))))...))))))........................)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_018986
GeneSymbolSH3TC1
Binding site2173,2219
Score0.872
Seed1
Au0.309
Energy-23.6
Binding len46
Me-4.957
Phylopstem2.8159840921052632
Phylopflank1.3111965
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
PositionCDS
2D Structure