Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCAACCCCAGCAGCAGCAT
.(((.(((((((((((.....&))))))...))))).))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_019035
GeneSymbolPCDH18
Binding site3273,3292
Score0.846
Seed0
Au0.441
Energy-19.8
Binding len19
Me-7.912
Phylopstem4.790758928571428
Phylopflank4.56108164625
Longest consecutive pairings6
Position of longest consecutive pairings13
Pairings in 3prime end3
PositionCDS
2D Structure