Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACGGCCCTTCAGATGGGAATTAATGTGGTGGACTCCGCAGTATCCGGATTAGGTGGCTGCCCTTATGCAAA
((((((((((((((((((((.&))))))))))..............................)))))........................))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_019036
GeneSymbolHMGCLL1
Binding site1006,1081
Score0.846
Seed1
Au0.456
Energy-20.0
Binding len75
Me-3.938
Phylopstem0.6050934112162162
Phylopflank0.6029324613750002
Longest consecutive pairings10
Position of longest consecutive pairings65
Pairings in 3prime end7
PositionCDS
2D Structure