Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCAGCGGAGCCGGAGCCACAGCCGCAGCGCC
..((.(((((((((((..(((&.)))))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_019088
GeneSymbolPAF1
Binding site1710,1742
Score0.808
Seed0
Au0.25
Energy-25.1
Binding len18
Me-9.076
Phylopstem4.606081272727272
Phylopflank4.784507671249999
Longest consecutive pairings16
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure