Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGTTGTTGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCTGCAGC
((((((((((.(((((.....&.))))).)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001365600
GeneSymbolPRPF40A
Binding site775,822
Score0.846
Seed1
Au0.426
Energy-24.9
Binding len18
Me-6.762
Phylopstem-0.57768312
Phylopflank-0.20191146825
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end3
PositionCDS
2D Structure