Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTAAGAATGTCAGCCCTGCAGCCAGGCTGCC
..((((((..(((((((.(((&.))).))))))).)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_019108
GeneSymbolSMG9
Binding site4748,4781
Score0.846
Seed1
Au0.441
Energy-24.3
Binding len20
Me-7.256
Phylopstem4.674341285714285
Phylopflank3.1908211525
Longest consecutive pairings7
Position of longest consecutive pairings8
Pairings in 3prime end7
Position3UTR
2D Structure