Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTAAGCATTGACACATAGCTTCATCTGAGGTGAGATATGGCAGCTGTT
..((((((((.((........&.)).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_019895
GeneSymbolCLDND1
Binding site1398,1447
Score0.846
Seed1
Au0.574
Energy-16.4
Binding len13
Me-9.607
Phylopstem4.5703175
Phylopflank3.8867779924999994
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end0
Position3UTR
2D Structure