Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACAGCTGTGCTGCC
..(((((.((((((((.....&))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020227
GeneSymbolPRDM9
Binding site828,842
Score0.923
Seed0
Au0.5
Energy-18.9
Binding len14
Me-7.271
Phylopstem1.31089575
Phylopflank1.4341284375
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end3
PositionCDS
2D Structure