Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCCCCTCTCCATGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC
..((((((((((((((..(((&.)))..))))))...)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020314
GeneSymbolVPS35L
Binding site256,309
Score0.846
Seed1
Au0.412
Energy-26.6
Binding len24
Me-4.957
Phylopstem4.396549352941176
Phylopflank2.6651425712499996
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure