Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTACGGCCTGTACCTGCGCATCGACCTGGAGCGGCTGCAAT
((((((((((((((((.((((&))))))))))......................)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020362
GeneSymbolPITHD1
Binding site179,222
Score0.846
Seed1
Au0.324
Energy-25.9
Binding len43
Me-3.938
Phylopstem4.01080097368421
Phylopflank3.64531023875
Longest consecutive pairings10
Position of longest consecutive pairings33
Pairings in 3prime end7
PositionCDS
2D Structure