Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTCAAGCAGCTGCT
..((((((((..(((.((((.&))))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020366
GeneSymbolRPGRIP1
Binding site3912,3928
Score0.923
Seed1
Au0.515
Energy-20.9
Binding len16
Me-11.362
Phylopstem2.601676425
Phylopflank1.46720593125
Longest consecutive pairings15
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure