Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACTTTACAACCAAATAAAATCTTGTCGGTGGCTGTG
..(((((((((((((((((((&)))))))))))................)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020647
GeneSymbolJPH1
Binding site3281,3317
Score0.923
Seed1
Au0.618
Energy-22.5
Binding len36
Me-4.957
Phylopstem3.540403257142857
Phylopflank4.283472937500001
Longest consecutive pairings11
Position of longest consecutive pairings25
Pairings in 3prime end8
Position3UTR
2D Structure