Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCGAGGGCGACCGCGGCTTCTTTGAAATAGACCAGGTCAATGGCGAA
((((((((((((((((..(((&)))....))))))))))))........................)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020766
GeneSymbolPCDH19
Binding site3497,3545
Score1.0
Seed1
Au0.426
Energy-24.4
Binding len48
Me-3.938
Phylopstem1.4793062875000005
Phylopflank1.8017868125000005
Longest consecutive pairings12
Position of longest consecutive pairings29
Pairings in 3prime end6
PositionCDS
2D Structure