Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGATGGCAGCGTCGGCTGCAC
.((((((((..(((((.((((&))))....)))))..)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020778
GeneSymbolALPK3
Binding site9164,9188
Score0.846
Seed1
Au0.397
Energy-23.1
Binding len24
Me-7.861
Phylopstem-0.257877875
Phylopflank0.003446681124999962
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure