Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGGACTACTGCTGAAGAGCTGTAT
.((((((((((((.((..(((&)))..)).))))).....))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020800
GeneSymbolIFT80
Binding site187,213
Score0.846
Seed1
Au0.544
Energy-18.6
Binding len26
Me-4.65
Phylopstem0.7204730823529415
Phylopflank0.35291175374999995
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure