Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGGACAGCGGGCAGCTGGGC
.(.(((((((.(((((..(((&)))..)))))..))))))).).
Details
MiRNAhsa-miR-5047
RefseqIDNM_020804
GeneSymbolPACSIN1
Binding site1538,1560
Score0.846
Seed0
Au0.309
Energy-22.6
Binding len22
Me-8.176
Phylopstem4.367601428571429
Phylopflank4.70138903
Longest consecutive pairings7
Position of longest consecutive pairings3
Pairings in 3prime end6
PositionCDS
2D Structure