Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&TTGCTTAGTGTGCCAGT
..(((((((((...((((....&))))...))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_020898
GeneSymbolCALCOCO1
Binding site5105,5122
Score0.846
Seed1
Au0.529
Energy-17.5
Binding len17
Me-10.45
Phylopstem4.212638666666667
Phylopflank3.0470031687500003
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure