Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCCCAGCTGTCACTCATGCAACAGCAGCCGCAGCAGCAGG
((((.(((((((((((.....&.))))))))))).)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_021072
GeneSymbolHCN1
Binding site2456,2499
Score0.923
Seed0
Au0.353
Energy-26.3
Binding len18
Me-8.057
Phylopstem-0.06005412727272732
Phylopflank0.013671286124999972
Longest consecutive pairings11
Position of longest consecutive pairings6
Pairings in 3prime end3
PositionCDS
2D Structure