Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTACAGCAGTAGTACCTTCTTTAAAAAAAAAAAAGAATCTGCGGT
((((((((((.(((((((((.&))))))))).))))..........................)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_021818
GeneSymbolSAV1
Binding site1807,1854
Score0.846
Seed1
Au0.735
Energy-18.0
Binding len47
Me-6.762
Phylopstem5.953426944444445
Phylopflank5.285047599999999
Longest consecutive pairings9
Position of longest consecutive pairings38
Pairings in 3prime end7
Position3UTR
2D Structure