Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCCGAGGACCAGGCTGCAC
.(((((((..((((.(..(((&)))..).)))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_021828
GeneSymbolHPSE2
Binding site3507,3527
Score0.846
Seed1
Au0.382
Energy-21.2
Binding len20
Me-6.828
Phylopstem5.648676142857143
Phylopflank5.018113977499999
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure