Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCCAGTCCCCACTCCACGGTGCAGCTGCGGCTTATCTCTCAGCCCAGCGAG
(((((((((((((((((..((&.))..)))))))))))))..............)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_021910
GeneSymbolFXYD3
Binding site244,296
Score0.846
Seed1
Au0.324
Energy-21.9
Binding len37
Me-3.938
Phylopstem-0.10266774967741937
Phylopflank-0.10750560162500004
Longest consecutive pairings13
Position of longest consecutive pairings19
Pairings in 3prime end6
Position5UTR
2D Structure