Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCCCCTCGTCTTCTCCCGGCTGGCGGCGACCGGCCTCAGCTGCAGC
((((((((((((((((..(((&.)))....)))))))....))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_021942
GeneSymbolTRAPPC11
Binding site84,133
Score0.846
Seed1
Au0.265
Energy-25.0
Binding len29
Me-3.938
Phylopstem-0.5184668
Phylopflank-0.0689313250000001
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end6
Position5UTR
2D Structure