Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGTAGTCGCAGCTACTCGCGAG
(((((((((((((((..((((&)))).)))))))))))....)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_021980
GeneSymbolOPTN
Binding site2251,2276
Score0.923
Seed1
Au0.412
Energy-20.3
Binding len25
Me-4.171
Phylopstem-0.43581784210526314
Phylopflank-0.08688048749999995
Longest consecutive pairings11
Position of longest consecutive pairings9
Pairings in 3prime end6
Position3UTR
2D Structure