Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&ATCTATTCTTTACAAAAATGTACATTGCCAGGTC
((((((((....(((((.((((&.)))).))))))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_022745
GeneSymbolATPAF1
Binding site3979,4013
Score1.0
Seed1
Au0.632
Energy-19.5
Binding len20
Me-12.408
Phylopstem0.442694375
Phylopflank0.8966696825000003
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure