Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TCTTGATGATCTTGGAGACCAGCAGCCACAGCTGCT
..(((((((.((((((..(((&.))).)))))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_022916
GeneSymbolVPS33A
Binding site3198,3234
Score1.0
Seed1
Au0.456
Energy-26.1
Binding len20
Me-6.2
Phylopstem6.076293142857144
Phylopflank4.66346150125
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure