Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GGCGAGCGAGCCGCGGCTGCC
..((((((((((((((..(.(&).)..)).)))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024016
GeneSymbolHOXB8
Binding site300,321
Score0.923
Seed1
Au0.324
Energy-24.4
Binding len21
Me-4.957
Phylopstem0.4393557133333333
Phylopflank0.7547013012499999
Longest consecutive pairings12
Position of longest consecutive pairings1
Pairings in 3prime end5
Position5UTR
2D Structure