Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTCTGCAACCCCCCAGCTCGCT
..(((((((.((((((((((.&))).)))))))...))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024016
GeneSymbolHOXB8
Binding site1861,1884
Score0.846
Seed1
Au0.426
Energy-21.3
Binding len23
Me-6.2
Phylopstem0.9589541818181818
Phylopflank2.35514873375
Longest consecutive pairings7
Position of longest consecutive pairings12
Pairings in 3prime end7
Position3UTR
2D Structure