Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTGAGTGAGGTGTTGCAGCCCAAAGGCTGCAGC
((((((((..((((((((.(.&.).))))))))....)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024017
GeneSymbolHOXB9
Binding site1423,1457
Score0.923
Seed1
Au0.456
Energy-22.5
Binding len24
Me-6.236
Phylopstem0.40434899999999996
Phylopflank0.30227221125000003
Longest consecutive pairings8
Position of longest consecutive pairings13
Pairings in 3prime end6
Position3UTR
2D Structure