Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCCCGCGCCCACCCCGGCGCCTCGCCCTGGGCTGACCGCAGCTGCC
..((((((((((((((.(((.&.)))..)).)))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024522
GeneSymbolNKAIN1
Binding site969,1016
Score0.846
Seed1
Au0.206
Energy-28.4
Binding len22
Me-4.957
Phylopstem0.25786319999999996
Phylopflank0.21869838825000004
Longest consecutive pairings12
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure