Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCGGATAGCGGCGCTGCGT
.((((((.((.(((((.((((&))))...))))).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024565
GeneSymbolCCNJL
Binding site223,245
Score0.846
Seed1
Au0.338
Energy-21.0
Binding len22
Me-8.932
Phylopstem0.13192366666666666
Phylopflank0.16469814375
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end7
Position5UTR
2D Structure