Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACTTTGCAACTTTAGCTGTC
..(((((((.(((((((((((&))))))))))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024612
GeneSymbolDHX40
Binding site1716,1736
Score0.923
Seed1
Au0.618
Energy-23.3
Binding len20
Me-6.2
Phylopstem5.303773636363637
Phylopflank3.6053887642499998
Longest consecutive pairings11
Position of longest consecutive pairings9
Pairings in 3prime end8
PositionCDS
2D Structure