Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTAAGACGCTGCTAATTGACTGCCACTTCGCAACTCAGGGGCGGCTGCAT
.(((((((((((((((.((((&.)))).)))))).....))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_024626
GeneSymbolVTCN1
Binding site1398,1449
Score1.0
Seed1
Au0.559
Energy-24.3
Binding len27
Me-3.793
Phylopstem0.05146450999999995
Phylopflank0.27469292374999993
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure